Variant report

Variant	rs62320124
Chromosome Location	chr4:106998181-106998182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10489129	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11942385	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036506	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036511	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036530	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036535	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4264831	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4472215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4552462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62318075	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62318079	0.84[EUR][1000 genomes]
rs62318080	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62318082	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62318085	0.84[EUR][1000 genomes]
rs62318087	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62318088	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62318089	0.88[EUR][1000 genomes]
rs62318090	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62318091	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62318092	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62318093	0.84[EUR][1000 genomes]
rs62318116	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62320069	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320070	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320112	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320113	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320115	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62320128	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62320129	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62321362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62321363	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62321364	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62321366	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62321372	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62321373	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62321374	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62321375	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62321376	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62321377	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62321378	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62321380	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62321382	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67566720	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6853347	0.84[EUR][1000 genomes]
rs72660519	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72660521	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72660532	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72675686	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72675692	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72675702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72677343	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72677353	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3414280	chr4:106987397-107017178	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3419151	chr4:106987397-107020894	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106984000-107010200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr4:106984600-106998200	Weak transcription	Fetal Heart	heart
3	chr4:106985000-107011400	Weak transcription	HepG2	liver
4	chr4:106986800-107002400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:106993000-107008800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:106993200-107010000	Weak transcription	Left Ventricle	heart
7	chr4:106993400-106998200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:106993400-107010400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:106993600-106998200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr4:106993600-106998400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr4:106993600-107002400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr4:106993600-107010000	Weak transcription	Right Ventricle	heart
13	chr4:106993800-107010800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr4:106994400-106998400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr4:106994600-106998400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr4:106994600-107015000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:106994800-106998200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr4:106994800-106999000	Weak transcription	Brain Substantia Nigra	brain
19	chr4:106994800-106999400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr4:106994800-107011600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr4:106995000-106999000	ZNF genes & repeats	Primary T cells from cord blood	blood
22	chr4:106995000-107004200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:106995200-107010000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:106995200-107011400	Weak transcription	Colonic Mucosa	Colon
25	chr4:106995400-106998200	Weak transcription	Fetal Kidney	kidney
26	chr4:106995400-106998400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr4:106995400-106998400	Weak transcription	Fetal Brain Male	brain
28	chr4:106995400-107004000	Weak transcription	Fetal Stomach	stomach
29	chr4:106995400-107004200	Weak transcription	Thymus	Thymus
30	chr4:106995400-107011000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr4:106995400-107011000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr4:106995600-107010400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr4:106995800-107000000	ZNF genes & repeats	Primary B cells from cord blood	blood
34	chr4:106996000-106998400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr4:106996000-107010800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr4:106996200-107003800	Weak transcription	Pancreas	Pancrea
37	chr4:106996400-106998400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr4:106997000-106998600	Strong transcription	Ovary	ovary
39	chr4:106997000-106999000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
40	chr4:106997000-107000200	ZNF genes & repeats	Liver	Liver
41	chr4:106997200-106998400	ZNF genes & repeats	Fetal Intestine Small	intestine
42	chr4:106997200-106998600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
43	chr4:106997200-107000200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
44	chr4:106997200-107031000	Weak transcription	Psoas Muscle	Psoas
45	chr4:106997400-106998200	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr4:106997400-106998200	Weak transcription	HSMM	muscle
47	chr4:106997400-106999000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
48	chr4:106997400-106999000	ZNF genes & repeats	Fetal Lung	lung
49	chr4:106997400-107004000	Weak transcription	Gastric	stomach
50	chr4:106997600-106998200	Weak transcription	Rectal Mucosa Donor 29	rectum

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