Variant report

Variant	rs62322611
Chromosome Location	chr4:102211425-102211426
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:102211391..102213772-chr4:102219486..102221204,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs62322612	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv879676	chr4:102202285-102340930	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102200000-102211800	Weak transcription	HMEC	breast
2	chr4:102200600-102211800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:102201000-102213000	Weak transcription	Fetal Heart	heart
4	chr4:102201200-102218200	Weak transcription	NHEK	skin
5	chr4:102201400-102214200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:102205000-102212600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr4:102207000-102216600	Weak transcription	NH-A	brain
8	chr4:102207200-102212000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr4:102207400-102212000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:102207400-102212000	Weak transcription	Gastric	stomach
11	chr4:102207400-102214200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:102207400-102214200	Weak transcription	Esophagus	oesophagus
13	chr4:102207600-102226400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:102208000-102212400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr4:102208600-102212800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr4:102208600-102212800	Enhancers	Brain Anterior Caudate	brain
17	chr4:102208600-102213200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr4:102208800-102211800	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr4:102209400-102211800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr4:102209400-102211800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr4:102209400-102212000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:102209400-102212000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr4:102209400-102214200	Weak transcription	Aorta	Aorta
24	chr4:102209400-102214400	Weak transcription	Right Ventricle	heart
25	chr4:102209800-102212000	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr4:102209800-102212400	Weak transcription	A549	lung
27	chr4:102209800-102214400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr4:102210000-102211800	Weak transcription	Stomach Mucosa	stomach
29	chr4:102210000-102212600	Enhancers	Primary T cells from cord blood	blood
30	chr4:102210200-102211800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr4:102210200-102211800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr4:102210200-102211800	Weak transcription	Adipose Nuclei	Adipose
33	chr4:102210200-102211800	Weak transcription	Colon Smooth Muscle	Colon
34	chr4:102210200-102211800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr4:102210200-102212000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr4:102210200-102212000	Weak transcription	Pancreas	Pancrea
37	chr4:102210200-102212200	Weak transcription	Brain Angular Gyrus	brain
38	chr4:102210200-102212800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr4:102210200-102213600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:102210200-102214600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr4:102210200-102215600	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr4:102210200-102225800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr4:102210400-102211600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr4:102210400-102212000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:102210600-102211800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr4:102210600-102211800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr4:102210600-102211800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr4:102210600-102212000	Weak transcription	Brain Substantia Nigra	brain
49	chr4:102210600-102212000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr4:102210600-102212000	Weak transcription	Osteobl	bone

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