Variant report

Variant	rs62326020
Chromosome Location	chr4:141924668-141924669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1003257	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11932554	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12019258	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13129199	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1364881	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425445	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17340802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17425151	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1895762	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1899424	0.85[ASN][1000 genomes]
rs3851424	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3851425	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4245936	0.85[ASN][1000 genomes]
rs56288735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59074378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60293572	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62325721	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62325722	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62325723	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62326022	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62326024	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6537024	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823670	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73849462	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73849490	0.85[ASN][1000 genomes]
rs7665647	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9994743	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141920200-141933200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:141920400-141937800	Weak transcription	Right Ventricle	heart
3	chr4:141923200-141925400	Enhancers	Rectal Smooth Muscle	rectum
4	chr4:141923400-141924800	Enhancers	Fetal Lung	lung
5	chr4:141923400-141924800	Enhancers	Ovary	ovary
6	chr4:141923400-141925200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:141923400-141925400	Enhancers	Colon Smooth Muscle	Colon
8	chr4:141923600-141924800	Enhancers	Fetal Stomach	stomach
9	chr4:141923800-141925200	Enhancers	Aorta	Aorta
10	chr4:141924000-141925000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:141924000-141925200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr4:141924200-141925600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr4:141924200-141925800	Enhancers	Stomach Smooth Muscle	stomach
14	chr4:141924200-141927400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:141924200-141932400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:141924400-141924800	Enhancers	Fetal Brain Male	brain
17	chr4:141924400-141924800	Enhancers	Left Ventricle	heart
18	chr4:141924400-141925200	Enhancers	Right Atrium	heart
19	chr4:141924400-141929000	Enhancers	Fetal Heart	heart
20	chr4:141924600-141924800	Enhancers	Liver	Liver
21	chr4:141924600-141925200	Enhancers	Psoas Muscle	Psoas
22	chr4:141924600-141925400	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr4:141924600-141926400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr4:141924600-141927600	Weak transcription	Adipose Nuclei	Adipose
25	chr4:141924600-141927600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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