Variant report

Variant	rs62328715
Chromosome Location	chr4:119987212-119987213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10002998	0.81[EUR][1000 genomes]
rs10020899	0.80[EUR][1000 genomes]
rs10021107	0.80[EUR][1000 genomes]
rs1047894	0.80[EUR][1000 genomes]
rs1058449	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1058451	0.80[EUR][1000 genomes]
rs1459063	0.80[EUR][1000 genomes]
rs17050108	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17050116	0.80[EUR][1000 genomes]
rs17050123	0.80[EUR][1000 genomes]
rs17265233	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17330453	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28411116	0.80[EUR][1000 genomes]
rs28493971	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28495816	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28560056	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28609814	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28698789	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28744401	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756153	0.80[EUR][1000 genomes]
rs62326862	0.82[ASN][1000 genomes]
rs62328679	0.80[EUR][1000 genomes]
rs62328680	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62328681	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62328710	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62328716	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62328720	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9998313	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119967400-119994000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr4:119971000-119989600	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:119975800-119994000	Weak transcription	Right Ventricle	heart
4	chr4:119975800-120003000	Weak transcription	Left Ventricle	heart
5	chr4:119979200-119996400	Weak transcription	Aorta	Aorta
6	chr4:119979400-119989800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:119980600-119994000	Weak transcription	Stomach Smooth Muscle	stomach

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