Variant report

Variant	rs62331862
Chromosome Location	chr4:143539444-143539445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143385183..143386744-chr4:143537618..143539562,2	MCF-7	breast:
2	chr4:143388945..143399475-chr4:143525396..143540220,51	MCF-7	breast:
3	chr4:143517546..143521080-chr4:143535706..143539870,4	MCF-7	breast:
4	chr4:143420095..143422300-chr4:143536470..143540708,3	MCF-7	breast:
5	chr4:143387939..143398265-chr4:143528932..143544358,55	MCF-7	breast:
6	chr4:143537607..143539576-chr4:143628828..143631506,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10000770	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10006418	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10015404	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10020322	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10020865	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11723318	0.84[ASN][1000 genomes]
rs11732693	0.81[AMR][1000 genomes]
rs13103597	0.89[AMR][1000 genomes]
rs13114437	0.88[AMR][1000 genomes]
rs13137056	0.84[ASN][1000 genomes]
rs13353799	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348362	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1348363	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28415364	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28485272	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28673920	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28733118	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28758601	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34082059	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34234953	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34393544	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34626802	0.86[EUR][1000 genomes]
rs34699252	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35255414	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35366693	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36101393	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36142547	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60361448	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62330251	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834451	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6849164	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6856817	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143532600-143540200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr4:143537000-143575800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:143537400-143540600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:143538000-143541800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:143538600-143543800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:143538800-143548800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:143539400-143539800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

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