Variant report

Variant	rs62331889
Chromosome Location	chr4:143615065-143615066
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13122722	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34676538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35557770	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62331864	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143609200-143615800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr4:143610200-143617000	Weak transcription	Thymus	Thymus
3	chr4:143611000-143617000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:143611000-143617400	Enhancers	Primary hematopoietic stem cells	blood
5	chr4:143611600-143617000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:143611800-143617000	Enhancers	Dnd41	blood
7	chr4:143612400-143617200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:143613000-143616800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr4:143613000-143617000	Weak transcription	Left Ventricle	heart
10	chr4:143613000-143617200	Weak transcription	Psoas Muscle	Psoas
11	chr4:143613200-143616800	Weak transcription	Fetal Heart	heart
12	chr4:143613200-143617000	Weak transcription	Fetal Thymus	thymus
13	chr4:143613800-143615200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr4:143614400-143615800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr4:143614400-143615800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr4:143614400-143616000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr4:143614600-143616800	Weak transcription	Primary T cells from cord blood	blood
18	chr4:143614800-143615800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:143615000-143616000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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