Variant report

Variant	rs62341480
Chromosome Location	chr4:148055163-148055164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17022603	1.00[AMR][1000 genomes]
rs17474227	1.00[AFR][1000 genomes]
rs55693428	1.00[AMR][1000 genomes]
rs62341479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62341524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62341845	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62342963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62343027	1.00[AFR][1000 genomes]
rs62343692	1.00[AMR][1000 genomes]
rs62343698	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148051000-148059200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:148051400-148055400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:148052000-148055800	Weak transcription	Ovary	ovary
4	chr4:148054800-148058000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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