Variant report
| Variant | rs62341520 |
|---|---|
| Chromosome Location | chr4:148075373-148075374 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1463961 | 0.87[EUR][1000 genomes] |
| rs1567180 | 0.87[EUR][1000 genomes] |
| rs17022697 | 0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17022750 | 0.96[EUR][1000 genomes] |
| rs17022758 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17022766 | 0.87[EUR][1000 genomes] |
| rs17022775 | 0.87[EUR][1000 genomes] |
| rs2357607 | 0.96[EUR][1000 genomes] |
| rs2357610 | 0.96[EUR][1000 genomes] |
| rs2357613 | 0.87[EUR][1000 genomes] |
| rs33994222 | 0.87[EUR][1000 genomes] |
| rs34007387 | 0.85[EUR][1000 genomes] |
| rs34132878 | 0.87[EUR][1000 genomes] |
| rs34311913 | 0.87[EUR][1000 genomes] |
| rs34644859 | 0.87[EUR][1000 genomes] |
| rs34857595 | 0.87[EUR][1000 genomes] |
| rs35313093 | 0.87[EUR][1000 genomes] |
| rs35808782 | 0.87[EUR][1000 genomes] |
| rs62341521 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs62341523 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs62341527 | 0.87[EUR][1000 genomes] |
| rs62341528 | 0.87[EUR][1000 genomes] |
| rs62341531 | 0.87[EUR][1000 genomes] |
| rs62341532 | 0.87[EUR][1000 genomes] |
| rs62341533 | 0.87[EUR][1000 genomes] |
| rs62341534 | 0.87[EUR][1000 genomes] |
| rs62341536 | 0.87[EUR][1000 genomes] |
| rs62341537 | 0.87[EUR][1000 genomes] |
| rs62341557 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024629 | chr4:147987351-148277008 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionmiRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:148070600-148078800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
