Variant report

Variant	rs62343689
Chromosome Location	chr4:148017230-148017231
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11929880	1.00[AFR][1000 genomes]
rs11932704	0.98[AFR][1000 genomes]
rs11934394	1.00[AFR][1000 genomes]
rs11935350	1.00[AFR][1000 genomes]
rs11935438	1.00[AFR][1000 genomes]
rs11936420	0.81[AFR][1000 genomes]
rs11938428	0.88[AFR][1000 genomes]
rs11940408	1.00[AFR][1000 genomes]
rs11940672	0.99[AFR][1000 genomes]
rs11940837	0.81[AFR][1000 genomes]
rs11940955	0.81[AFR][1000 genomes]
rs11941436	1.00[AFR][1000 genomes]
rs11941445	1.00[AFR][1000 genomes]
rs11941654	0.94[AFR][1000 genomes]
rs11941745	1.00[AFR][1000 genomes]
rs11941828	0.81[AFR][1000 genomes]
rs11941835	0.81[AFR][1000 genomes]
rs11942353	1.00[AFR][1000 genomes]
rs11942559	1.00[AFR][1000 genomes]
rs11942610	1.00[AFR][1000 genomes]
rs11944039	1.00[AFR][1000 genomes]
rs11945211	0.81[AFR][1000 genomes]
rs11945471	0.99[AFR][1000 genomes]
rs11945733	1.00[AFR][1000 genomes]
rs11946351	1.00[AFR][1000 genomes]
rs11946419	0.99[AFR][1000 genomes]
rs11947471	0.99[AFR][1000 genomes]
rs17022582	1.00[AFR][1000 genomes]
rs17022600	0.99[AFR][1000 genomes]
rs35044197	0.98[AFR][1000 genomes]
rs35656690	0.88[AFR][1000 genomes]
rs60132894	0.86[AFR][1000 genomes]
rs61415692	0.98[AFR][1000 genomes]
rs62341463	0.81[AFR][1000 genomes]
rs62341464	0.81[AFR][1000 genomes]
rs62343687	1.00[AFR][1000 genomes]
rs62343688	0.88[AFR][1000 genomes]
rs62343690	0.99[AFR][1000 genomes]
rs62343693	1.00[AFR][1000 genomes]
rs62343696	1.00[AFR][1000 genomes]
rs62343697	1.00[AFR][1000 genomes]
rs62343699	0.99[AFR][1000 genomes]
rs62343700	0.95[AFR][1000 genomes]
rs62343701	0.84[AFR][1000 genomes]
rs62343702	0.81[AFR][1000 genomes]
rs62343703	0.81[AFR][1000 genomes]
rs73853360	0.81[AFR][1000 genomes]
rs73853361	0.81[AFR][1000 genomes]
rs73853362	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
3	esv3331365	chr4:148015652-148017850	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148009800-148017400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:148010000-148022800	Weak transcription	NHLF	lung
3	chr4:148010200-148017800	Weak transcription	Osteobl	bone
4	chr4:148010400-148021200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:148010800-148018000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:148014800-148017600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:148016200-148017400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:148016800-148017800	Enhancers	Fetal Heart	heart
9	chr4:148017000-148018800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:148017200-148018400	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links