Variant report

Variant	rs62346602
Chromosome Location	chr4:141761067-141761068
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10021129	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6537009	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6836292	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9884925	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9884927	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9993702	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141760200-141761600	Enhancers	Placenta Amnion	Placenta Amnion
2	chr4:141760200-141761800	Enhancers	Fetal Lung	lung
3	chr4:141760400-141761200	Enhancers	Left Ventricle	heart
4	chr4:141760400-141761400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:141760600-141761200	Enhancers	Placenta	Placenta
6	chr4:141760600-141761400	Enhancers	Ovary	ovary
7	chr4:141760600-141761600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr4:141760600-141761600	Enhancers	Fetal Muscle Leg	muscle
9	chr4:141760600-141761600	Enhancers	Fetal Stomach	stomach
10	chr4:141760600-141761800	Enhancers	Colon Smooth Muscle	Colon
11	chr4:141760800-141761600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:141760800-141761800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:141760800-141761800	Enhancers	Rectal Smooth Muscle	rectum
14	chr4:141761000-141761200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:141761000-141761400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:141761000-141761400	Enhancers	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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