Variant report

Variant	rs62348081
Chromosome Location	chr5:15885906-15885907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1087196	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11749742	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11948399	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12655296	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs146351	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1505031	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs173998	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs185406	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs187705	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2089201	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs257734	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs257735	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs257736	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs257737	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs257738	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs257739	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs257740	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs257741	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs257742	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs257744	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs257745	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs257746	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs257747	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs257748	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs257749	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs257750	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs257752	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257753	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257754	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257755	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257756	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257757	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257758	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs257759	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257760	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257761	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257762	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257763	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs257764	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs257765	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs257767	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs257768	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs257769	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs257770	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs257771	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs257772	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs257774	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs257777	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs257778	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs257779	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs257780	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs257781	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs257782	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35573147	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35695218	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs366760	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs389114	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs389804	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs393806	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs398082	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs399259	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs402438	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs406819	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs407717	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs415718	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs416952	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs418619	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs422958	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs423447	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs428910	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs433107	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs434475	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs435109	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs441343	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs445085	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4643955	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560818	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62348078	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62348083	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870163	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs793424	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs793425	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv461986	chr5:15854098-15943683	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv597292	chr5:15854098-15943683	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15880600-15886600	Weak transcription	Right Ventricle	heart
2	chr5:15880600-15897000	Weak transcription	Left Ventricle	heart
3	chr5:15882200-15886200	Weak transcription	Fetal Brain Male	brain
4	chr5:15884800-15886200	Enhancers	Fetal Heart	heart
5	chr5:15884800-15892000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:15885000-15886000	Enhancers	Ovary	ovary
7	chr5:15885200-15887000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr5:15885400-15887400	Enhancers	Colon Smooth Muscle	Colon
9	chr5:15885400-15890600	Weak transcription	Aorta	Aorta
10	chr5:15885600-15886000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:15885600-15886000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:15885600-15886000	Enhancers	HSMMtube	muscle
13	chr5:15885600-15886600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr5:15885800-15888800	Enhancers	Fetal Stomach	stomach

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