Variant report

Variant	rs62348083
Chromosome Location	chr5:15895225-15895226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10042283	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10520829	0.81[EUR][1000 genomes]
rs10520830	0.81[AMR][1000 genomes]
rs1087196	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11749742	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11948399	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12188594	0.81[AMR][1000 genomes]
rs12653963	0.82[AMR][1000 genomes]
rs12655296	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13154254	0.81[EUR][1000 genomes]
rs146351	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1505031	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs173998	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs185406	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs187705	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2089201	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs257734	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs257735	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs257736	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs257737	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs257738	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs257739	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs257740	0.80[EUR][1000 genomes]
rs257741	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs257742	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs257744	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs257745	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs257746	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs257747	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs257748	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs257749	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs257750	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs257752	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257753	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257754	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257755	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257756	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257757	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257758	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs257759	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257760	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257761	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257762	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs257763	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs257764	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs257765	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs257767	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs257768	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs257769	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs257770	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs257771	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs257772	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs257774	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs257777	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs257778	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs257779	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs257780	0.81[AMR][1000 genomes]
rs257781	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs257782	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35573147	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35695218	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs366760	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs389114	0.82[AMR][1000 genomes]
rs389804	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs393806	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs398082	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs399259	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs402438	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs406819	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs407717	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs415718	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs416952	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs418619	0.83[AMR][1000 genomes]
rs422958	0.83[EUR][1000 genomes]
rs423447	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs428910	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs433107	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs434475	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs435109	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4410637	0.81[EUR][1000 genomes]
rs441343	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs445085	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4643955	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560818	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62348078	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62348081	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870163	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876718	0.81[AMR][1000 genomes]
rs793424	0.82[EUR][1000 genomes]
rs793425	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv461986	chr5:15854098-15943683	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv597292	chr5:15854098-15943683	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15880600-15897000	Weak transcription	Left Ventricle	heart
2	chr5:15887400-15899600	Weak transcription	Colon Smooth Muscle	Colon
3	chr5:15887600-15896400	Weak transcription	Fetal Heart	heart
4	chr5:15892600-15901200	Weak transcription	Fetal Stomach	stomach
5	chr5:15892600-15902200	Weak transcription	Lung	lung

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