Variant report

Variant	rs62365871
Chromosome Location	chr5:80646599-80646600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72771198	1.00[AFR][1000 genomes]
rs72773017	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80640800-80648000	Weak transcription	HepG2	liver
2	chr5:80642200-80647200	Weak transcription	Liver	Liver
3	chr5:80644800-80646800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:80645600-80647000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:80645600-80647000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr5:80646000-80646800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:80646400-80646600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:80646400-80646800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:80646400-80646800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:80646400-80647000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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