Variant report

Variant	rs62366042
Chromosome Location	chr5:95584430-95584431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs62364599	1.00[ASN][1000 genomes]
rs62364642	1.00[ASN][1000 genomes]
rs62365987	1.00[ASN][1000 genomes]
rs62366013	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv882390	chr5:95486940-95591580	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95581000-95585400	Enhancers	Fetal Lung	lung
2	chr5:95581800-95585000	Enhancers	HepG2	liver
3	chr5:95582200-95585800	Enhancers	Fetal Brain Male	brain
4	chr5:95582400-95584600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr5:95582800-95584800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:95582800-95584800	Enhancers	Fetal Heart	heart
7	chr5:95582800-95585200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:95583200-95584800	Flanking Active TSS	NHEK	skin
9	chr5:95583200-95590200	Weak transcription	A549	lung
10	chr5:95583200-95595200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:95583400-95584600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:95583600-95584800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:95583600-95584800	Enhancers	Liver	Liver
14	chr5:95583600-95586000	Weak transcription	Esophagus	oesophagus
15	chr5:95583800-95584600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:95583800-95584600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr5:95583800-95585200	Enhancers	HMEC	breast
18	chr5:95583800-95588800	Weak transcription	NH-A	brain
19	chr5:95583800-95590800	Weak transcription	Aorta	Aorta
20	chr5:95583800-95595000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr5:95583800-95595000	Weak transcription	Psoas Muscle	Psoas
22	chr5:95584000-95584800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:95584000-95588400	Weak transcription	Osteobl	bone
24	chr5:95584000-95590600	Weak transcription	HSMMtube	muscle
25	chr5:95584000-95592400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr5:95584200-95584600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr5:95584200-95585600	Weak transcription	Pancreas	Pancrea
28	chr5:95584200-95586000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr5:95584200-95586000	Weak transcription	Left Ventricle	heart
30	chr5:95584200-95588200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr5:95584200-95588200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr5:95584200-95589000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr5:95584400-95588000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr5:95584400-95588200	Weak transcription	HSMM	muscle

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