The 2.0 version of rSNPBase

Variant report

Variant rs62368661
Chromosome Location chr5:60693874-60693875
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:60659000-60703800 Weak transcription Primary B cells from cord blood blood
2 chr5:60659400-60703600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
3 chr5:60659600-60697600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr5:60681200-60704000 Weak transcription Brain Germinal Matrix brain
5 chr5:60682000-60709800 Weak transcription Left Ventricle heart
6 chr5:60682200-60695600 Weak transcription HUES64 Cell Line embryonic stem cell
7 chr5:60682400-60695800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr5:60682400-60697800 Weak transcription Fetal Kidney kidney
9 chr5:60682400-60698800 Weak transcription Small Intestine intestine
10 chr5:60682600-60695800 Weak transcription Breast Myoepithelial Primary Cells Breast
11 chr5:60682600-60703600 Weak transcription Rectal Smooth Muscle rectum
12 chr5:60682600-60704200 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr5:60682600-60712400 Weak transcription Esophagus oesophagus
14 chr5:60683000-60696800 Weak transcription HSMMtube muscle
15 chr5:60684600-60696800 Weak transcription Primary T helper cells PMA-I stimulated --
16 chr5:60685000-60696400 Weak transcription Colon Smooth Muscle Colon
17 chr5:60685400-60704000 Weak transcription Primary B cells from peripheral blood blood
18 chr5:60685800-60695400 Weak transcription Fetal Brain Male brain
19 chr5:60686400-60697600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr5:60687400-60703600 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr5:60687400-60705800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr5:60687600-60695800 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr5:60687600-60697000 Weak transcription Primary monocytes fromperipheralblood blood
24 chr5:60687600-60697000 Weak transcription HSMM muscle
25 chr5:60687600-60697600 Weak transcription Fetal Brain Female brain
26 chr5:60687600-60697600 Weak transcription Fetal Lung lung
27 chr5:60687600-60704400 Weak transcription Ovary ovary
28 chr5:60687600-60711800 Weak transcription Aorta Aorta
29 chr5:60687800-60698600 Weak transcription Primary hematopoietic stem cells blood
30 chr5:60687800-60699400 Weak transcription Fetal Stomach stomach
31 chr5:60687800-60703800 Weak transcription Stomach Smooth Muscle stomach
32 chr5:60687800-60704200 Weak transcription Fetal Adrenal Gland Adrenal Gland
33 chr5:60688000-60696800 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr5:60688000-60697200 Weak transcription Monocytes-CD14+_RO01746 blood
35 chr5:60689600-60696000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr5:60690200-60697400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr5:60690200-60697600 Weak transcription Right Atrium heart
38 chr5:60690400-60695600 Weak transcription Right Ventricle heart
39 chr5:60690400-60697600 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr5:60690400-60703600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr5:60690800-60698800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
42 chr5:60690800-60704400 Weak transcription Psoas Muscle Psoas
43 chr5:60690800-60705800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr5:60690800-60706800 Weak transcription Gastric stomach
45 chr5:60691000-60704400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
46 chr5:60691200-60697000 Weak transcription Pancreas Pancrea
47 chr5:60691400-60695200 Weak transcription Liver Liver
48 chr5:60692800-60694000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr5:60692800-60694000 Enhancers Brain Cingulate Gyrus brain
50 chr5:60692800-60694000 Enhancers Brain Inferior Temporal Lobe brain

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Last update: Aug 31, 2015