Variant report

Variant	rs62368664
Chromosome Location	chr5:60721565-60721566
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10514908	0.86[AMR][1000 genomes]
rs11738493	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11746741	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158938	0.86[AMR][1000 genomes]
rs13164700	0.86[AMR][1000 genomes]
rs13165663	0.84[AMR][1000 genomes]
rs13166779	0.84[AMR][1000 genomes]
rs13168165	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13170519	0.84[AMR][1000 genomes]
rs13174756	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17338553	0.86[AMR][1000 genomes]
rs34027100	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34323293	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35704054	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36069847	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55819324	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62368661	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7446236	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028884	chr5:60414723-60732779	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60698000-60725400	Weak transcription	Spleen	Spleen
2	chr5:60705200-60727200	Weak transcription	Fetal Stomach	stomach
3	chr5:60706000-60728000	Weak transcription	Fetal Intestine Small	intestine
4	chr5:60706200-60727800	Weak transcription	HUVEC	blood vessel
5	chr5:60711000-60735800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr5:60712600-60727600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:60712800-60725400	Weak transcription	Pancreas	Pancrea
8	chr5:60713400-60732800	Weak transcription	Small Intestine	intestine
9	chr5:60713800-60724400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:60714000-60725000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr5:60714000-60725200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:60714000-60725600	Weak transcription	Stomach Mucosa	stomach
13	chr5:60714000-60727800	Weak transcription	Brain Germinal Matrix	brain
14	chr5:60717200-60726200	Weak transcription	Primary B cells from cord blood	blood
15	chr5:60717400-60724800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:60719000-60722000	Enhancers	Brain Cingulate Gyrus	brain
17	chr5:60719200-60721800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:60719200-60722400	Enhancers	Fetal Heart	heart
19	chr5:60719200-60723600	Enhancers	Brain Angular Gyrus	brain
20	chr5:60719200-60729400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr5:60719400-60721800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr5:60719600-60726600	Weak transcription	Thymus	Thymus
23	chr5:60719800-60724600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr5:60719800-60724600	Weak transcription	Liver	Liver
25	chr5:60719800-60725400	Weak transcription	Fetal Kidney	kidney
26	chr5:60719800-60745200	Weak transcription	NHDF-Ad	bronchial
27	chr5:60720000-60721600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr5:60720000-60721800	Enhancers	Colon Smooth Muscle	Colon
29	chr5:60720000-60722000	Enhancers	Brain Anterior Caudate	brain
30	chr5:60720000-60722000	Enhancers	Brain Hippocampus Middle	brain
31	chr5:60720000-60724200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr5:60720000-60724600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:60720000-60725000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr5:60720000-60725000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr5:60720000-60725000	Weak transcription	Gastric	stomach
36	chr5:60720000-60725200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr5:60720000-60725400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr5:60720000-60725400	Weak transcription	Right Atrium	heart
39	chr5:60720000-60727800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr5:60720000-60733800	Weak transcription	NHLF	lung
41	chr5:60720000-60736400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr5:60720000-60737400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr5:60720200-60724800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr5:60720200-60725200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr5:60720400-60721600	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr5:60720400-60725000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr5:60720400-60725200	Weak transcription	Fetal Brain Female	brain
48	chr5:60720400-60725200	Weak transcription	Fetal Lung	lung
49	chr5:60720400-60725400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr5:60720400-60728200	Weak transcription	Fetal Muscle Leg	muscle

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