Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:45126509..45127120-chr5:45135100..45135681,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12055286	1.00[ASN][1000 genomes]
rs12153053	0.82[ASN][1000 genomes]
rs12514615	0.84[ASN][1000 genomes]
rs12516488	0.92[ASN][1000 genomes]
rs12517546	0.84[ASN][1000 genomes]
rs12520430	0.92[ASN][1000 genomes]
rs12521953	0.84[ASN][1000 genomes]
rs12522524	0.84[ASN][1000 genomes]
rs12522910	0.84[ASN][1000 genomes]
rs12523384	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1472584	0.92[ASN][1000 genomes]
rs16902068	0.84[ASN][1000 genomes]
rs4267876	1.00[ASN][1000 genomes]
rs4357042	0.92[ASN][1000 genomes]
rs4566805	0.92[ASN][1000 genomes]
rs56699889	0.86[ASN][1000 genomes]
rs62367468	0.92[ASN][1000 genomes]
rs62367469	0.92[ASN][1000 genomes]
rs62367473	0.92[ASN][1000 genomes]
rs62367515	0.84[ASN][1000 genomes]
rs62367516	0.84[ASN][1000 genomes]
rs62369908	0.82[ASN][1000 genomes]
rs62369912	0.82[ASN][1000 genomes]
rs62369916	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033740	chr5:44996257-45378556	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537743	chr5:44996257-45378556	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1018651	chr5:45003750-45437670	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv537744	chr5:45003750-45437670	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv869151	chr5:45003751-45362364	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv830280	chr5:45067773-45250757	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:45134400-45135400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:45135200-45136000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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