The 2.0 version of rSNPBase

Variant report

Variant rs62371271
Chromosome Location chr5:16592134-16592135
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16578400-16606800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr5:16579400-16593200 Weak transcription ES-I3 Cell Line embryonic stem cell
3 chr5:16581000-16598400 Weak transcription Stomach Smooth Muscle stomach
4 chr5:16581400-16593200 Weak transcription Right Ventricle heart
5 chr5:16581400-16596000 Weak transcription Fetal Brain Female brain
6 chr5:16583400-16599600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr5:16584400-16592400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
8 chr5:16585400-16615600 Weak transcription Primary B cells from cord blood blood
9 chr5:16585600-16600000 Weak transcription Gastric stomach
10 chr5:16585800-16605000 Weak transcription Fetal Intestine Large intestine
11 chr5:16586000-16594800 Weak transcription Breast Myoepithelial Primary Cells Breast
12 chr5:16586600-16593200 Weak transcription Brain Germinal Matrix brain
13 chr5:16587400-16593200 Weak transcription Cortex derived primary cultured neurospheres brain
14 chr5:16587400-16600400 Weak transcription Monocytes-CD14+_RO01746 blood
15 chr5:16587600-16596400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
16 chr5:16587600-16598200 Weak transcription Fetal Intestine Small intestine
17 chr5:16588600-16593200 Weak transcription Left Ventricle heart
18 chr5:16588800-16595400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr5:16589000-16593000 Weak transcription Brain Angular Gyrus brain
20 chr5:16589000-16593400 Weak transcription Stomach Mucosa stomach
21 chr5:16589000-16614800 Weak transcription Pancreatic Islets Pancreatic Islet
22 chr5:16590000-16593800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
23 chr5:16590200-16593200 Weak transcription Brain Inferior Temporal Lobe brain
24 chr5:16590200-16598800 Weak transcription Primary T regulatory cells fromperipheralblood blood
25 chr5:16590200-16616000 Weak transcription Pancreas Pancrea
26 chr5:16590400-16593400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
27 chr5:16590400-16597800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
28 chr5:16590800-16594200 Enhancers Primary T helper cells PMA-I stimulated --
29 chr5:16590800-16597000 Enhancers Primary T helper naive cells fromperipheralblood blood
30 chr5:16591000-16592600 Enhancers Fetal Brain Male brain
31 chr5:16591000-16595000 Enhancers Brain Substantia Nigra brain
32 chr5:16591200-16593200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
33 chr5:16591400-16592200 Enhancers Fetal Heart heart
34 chr5:16591400-16592400 Enhancers Primary T cells from cord blood blood
35 chr5:16591400-16594200 Enhancers Primary T helper cells fromperipheralblood blood
36 chr5:16591400-16594400 Enhancers Brain Cingulate Gyrus brain
37 chr5:16591400-16594400 Enhancers Brain Hippocampus Middle brain
38 chr5:16591600-16592200 Enhancers HUES64 Cell Line embryonic stem cell
39 chr5:16591600-16592200 Enhancers iPS-15b Cell Line embryonic stem cell
40 chr5:16591600-16592600 Enhancers Primary T killer naive cells fromperipheralblood blood
41 chr5:16591600-16592600 Enhancers Primary T killer memory cells from peripheral blood blood
42 chr5:16591600-16593400 Weak transcription Adipose Nuclei Adipose
43 chr5:16591600-16593600 Genic enhancers Thymus Thymus
44 chr5:16591600-16594200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr5:16591600-16594200 Enhancers Brain Anterior Caudate brain
46 chr5:16591600-16594400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr5:16591800-16593200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
48 chr5:16591800-16593400 Enhancers NHDF-Ad bronchial
49 chr5:16591800-16611600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
50 chr5:16592000-16592600 Weak transcription Right Atrium heart

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Last update: Aug 31, 2015