Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55682415	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55739224	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55786975	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56119297	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56156250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373303	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62373304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373306	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373319	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373320	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373321	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62373322	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72778785	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72778787	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72778796	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72781129	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72781131	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124609000-124614800	Enhancers	HUVEC	blood vessel
2	chr5:124611600-124617200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:124611600-124617200	Weak transcription	Colon Smooth Muscle	Colon
4	chr5:124611800-124617200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:124612400-124614400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:124612600-124614400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:124612600-124614400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr5:124612600-124614800	Enhancers	NH-A	brain
9	chr5:124612800-124616800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:124612800-124617200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr5:124613400-124614800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:124613600-124617200	Weak transcription	Fetal Heart	heart
13	chr5:124613800-124614400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr5:124614000-124614600	Weak transcription	HSMMtube	muscle

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