Variant report

Variant	rs62373389
Chromosome Location	chr5:124873821-124873822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10076374	0.96[EUR][1000 genomes]
rs13157757	0.92[EUR][1000 genomes]
rs1598817	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2220621	0.92[EUR][1000 genomes]
rs59771425	0.92[EUR][1000 genomes]
rs60163815	0.89[EUR][1000 genomes]
rs60696888	0.92[EUR][1000 genomes]
rs61202049	0.89[EUR][1000 genomes]
rs62373366	0.92[EUR][1000 genomes]
rs62373367	0.92[EUR][1000 genomes]
rs62373368	0.92[EUR][1000 genomes]
rs62373384	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62373385	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62373387	1.00[EUR][1000 genomes]
rs62373391	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62373392	0.92[EUR][1000 genomes]
rs62373412	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62373414	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6899200	0.89[EUR][1000 genomes]
rs7710810	0.92[EUR][1000 genomes]
rs7717300	0.96[EUR][1000 genomes]
rs7728701	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030992	chr5:124708549-125391503	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv537892	chr5:124708549-125391503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv882824	chr5:124789500-124875058	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv882825	chr5:124836528-124877035	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv882826	chr5:124840910-124875058	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	nsv882827	chr5:124867823-124943901	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv882828	chr5:124867823-124958205	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124872000-124885200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:124873600-124875000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:124873800-124874400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links