Variant report

Variant	rs62373414
Chromosome Location	chr5:124910735-124910736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10076374	0.92[EUR][1000 genomes]
rs13157757	0.96[EUR][1000 genomes]
rs13167694	0.82[EUR][1000 genomes]
rs13167816	0.82[EUR][1000 genomes]
rs1598817	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2220621	0.96[EUR][1000 genomes]
rs59771425	0.81[EUR][1000 genomes]
rs60696888	0.96[EUR][1000 genomes]
rs62373366	0.81[EUR][1000 genomes]
rs62373367	0.81[EUR][1000 genomes]
rs62373368	0.81[EUR][1000 genomes]
rs62373384	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62373385	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62373387	0.89[EUR][1000 genomes]
rs62373389	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62373391	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62373392	0.96[EUR][1000 genomes]
rs62373412	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7710810	0.96[EUR][1000 genomes]
rs7717300	0.92[EUR][1000 genomes]
rs7728701	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030992	chr5:124708549-125391503	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv537892	chr5:124708549-125391503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv882827	chr5:124867823-124943901	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv882828	chr5:124867823-124958205	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv4986	chr5:124899753-124944916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124908400-124912000	Enhancers	Fetal Heart	heart
2	chr5:124908600-124911400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:124908600-124911400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:124908600-124911400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:124908800-124912200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:124908800-124912800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:124908800-124914800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:124909000-124911600	Enhancers	Brain Germinal Matrix	brain
9	chr5:124909200-124911400	Enhancers	Brain Cingulate Gyrus	brain
10	chr5:124909200-124912800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr5:124909200-124912800	Enhancers	Brain Substantia Nigra	brain
12	chr5:124909600-124911400	Enhancers	Brain Hippocampus Middle	brain
13	chr5:124909600-124911600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr5:124909600-124911800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:124909800-124911600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:124909800-124912200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr5:124910000-124912200	Enhancers	Fetal Brain Male	brain
18	chr5:124910000-124912800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr5:124910200-124910800	Enhancers	H1 Cell Line	embryonic stem cell
20	chr5:124910200-124912800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr5:124910200-124912800	Enhancers	Brain Anterior Caudate	brain
22	chr5:124910200-124912800	Enhancers	Fetal Muscle Leg	muscle
23	chr5:124910200-124912800	Enhancers	Fetal Stomach	stomach
24	chr5:124910200-124913000	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr5:124910400-124911400	Weak transcription	HSMMtube	muscle
26	chr5:124910400-124911600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr5:124910400-124911600	Enhancers	Fetal Brain Female	brain
28	chr5:124910400-124912000	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr5:124910400-124912000	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr5:124910400-124912800	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr5:124910400-124912800	Enhancers	Fetal Lung	lung
32	chr5:124910600-124911600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr5:124910600-124912800	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links