Variant report

Variant	rs62377606
Chromosome Location	chr5:146425639-146425640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1031915	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1031916	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11167956	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1125457	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1383167	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1383168	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17105791	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1842343	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2400234	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2400236	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4705454	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56672131	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61088380	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62373342	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62377581	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62377607	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6880660	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6880992	0.80[EUR][1000 genomes]
rs6881673	0.81[EUR][1000 genomes]
rs922585	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9325031	0.80[EUR][1000 genomes]
rs997979	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015804	chr5:146066000-146788233	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv537915	chr5:146066000-146788233	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv519847	chr5:146166378-146812647	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv599938	chr5:146169511-146806365	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv869238	chr5:146179403-146787986	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv1026599	chr5:146366481-146490089	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146421400-146426800	Enhancers	Brain Cingulate Gyrus	brain
2	chr5:146421800-146427400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:146422200-146427000	Enhancers	Brain Anterior Caudate	brain
4	chr5:146422200-146428000	Enhancers	Brain Hippocampus Middle	brain
5	chr5:146422400-146426800	Enhancers	Brain Angular Gyrus	brain
6	chr5:146422600-146429000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr5:146423400-146428000	Enhancers	Brain Substantia Nigra	brain
8	chr5:146423800-146426800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:146424000-146426800	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr5:146424400-146426000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr5:146424600-146426800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:146425000-146425800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr5:146425000-146426000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr5:146425200-146425800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr5:146425200-146426400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr5:146425400-146425800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:146425400-146425800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr5:146425400-146426000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr5:146425400-146428000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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