Variant report

Variant	rs62380064
Chromosome Location	chr5:116773215-116773216
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12655647	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12656922	0.87[AMR][1000 genomes]
rs12657924	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141696	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141732	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17141753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17141756	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17141763	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141806	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62378227	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62378228	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62378233	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62378248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62378259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62380129	0.81[AMR][1000 genomes]
rs62380377	1.00[AFR][1000 genomes]
rs6886520	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116770400-116773600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:116770600-116774600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr5:116771000-116773400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:116772200-116773800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:116772800-116773800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:116772800-116773800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:116772800-116773800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:116772800-116773800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr5:116773000-116773400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr5:116773000-116773600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr5:116773000-116774000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:116773200-116773800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr5:116773200-116773800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:116773200-116774600	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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