Variant report

Variant	rs62380131
Chromosome Location	chr5:116828102-116828103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10061943	0.84[ASN][1000 genomes]
rs10062047	0.84[ASN][1000 genomes]
rs10062830	0.84[ASN][1000 genomes]
rs10065513	0.84[ASN][1000 genomes]
rs10072129	0.84[ASN][1000 genomes]
rs10478361	0.84[ASN][1000 genomes]
rs12109171	0.81[EUR][1000 genomes]
rs12332100	0.84[ASN][1000 genomes]
rs12332103	0.84[ASN][1000 genomes]
rs12332110	0.84[ASN][1000 genomes]
rs12332453	0.84[ASN][1000 genomes]
rs1428060	0.84[ASN][1000 genomes]
rs1428061	0.84[ASN][1000 genomes]
rs1428062	0.84[ASN][1000 genomes]
rs1428063	0.84[ASN][1000 genomes]
rs1428064	0.84[ASN][1000 genomes]
rs17141934	0.84[ASN][1000 genomes]
rs17141946	0.84[ASN][1000 genomes]
rs17141948	0.84[ASN][1000 genomes]
rs62380133	0.84[ASN][1000 genomes]
rs62380134	0.84[ASN][1000 genomes]
rs62380136	0.84[ASN][1000 genomes]
rs6889145	0.84[ASN][1000 genomes]
rs7379810	0.84[ASN][1000 genomes]
rs9327043	0.84[ASN][1000 genomes]
rs9327044	0.84[ASN][1000 genomes]
rs9327045	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882756	chr5:116783660-116905052	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv882757	chr5:116810010-117042759	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2763493	chr5:116826714-116841438	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116825200-116829000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:116825200-116829400	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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