Variant report

Variant	rs62385837
Chromosome Location	chr6:13507304-13507305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57489291	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61401710	1.00[ASN][1000 genomes]
rs62385810	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62385811	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62385842	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62385845	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62385846	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73372816	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73372865	0.93[AFR][1000 genomes]
rs73372868	0.95[AFR][1000 genomes]
rs7747655	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758264	1.00[EUR][1000 genomes]
rs9474418	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv462640	chr6:13426539-13519434	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv600994	chr6:13426539-13519434	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv470802	chr6:13441424-13519371	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13500200-13512600	Weak transcription	Small Intestine	intestine
2	chr6:13505600-13507600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:13506000-13508600	Weak transcription	Adipose Nuclei	Adipose
4	chr6:13506000-13509400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:13506200-13508800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:13506200-13509800	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:13506200-13512400	Weak transcription	Right Atrium	heart
8	chr6:13506800-13508000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:13507000-13508200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:13507000-13511200	Weak transcription	Spleen	Spleen
11	chr6:13507200-13512400	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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