Variant report

Variant	rs62406119
Chromosome Location	chr6:55907423-55907424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs62406065	0.90[EUR][1000 genomes]
rs62406067	0.90[EUR][1000 genomes]
rs62406071	0.90[EUR][1000 genomes]
rs62406072	0.90[EUR][1000 genomes]
rs62406075	0.93[EUR][1000 genomes]
rs62406076	0.93[EUR][1000 genomes]
rs62406077	0.93[EUR][1000 genomes]
rs62406109	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406110	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406111	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406112	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406113	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406114	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406115	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406116	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406118	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406120	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406124	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406126	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7740526	0.90[EUR][1000 genomes]
rs7745793	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7749409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7755079	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7756577	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7775091	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464329	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464330	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464331	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464332	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464335	0.90[EUR][1000 genomes]
rs9475520	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9475521	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9475522	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475523	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9475524	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475525	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475526	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475527	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475528	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475529	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475531	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475532	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475537	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475538	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475540	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475542	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475544	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475546	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475547	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475548	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475549	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475551	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv830665	chr6:55755560-55920219	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	esv3498415	chr6:55830704-55911231	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3498412	chr6:55830968-55909153	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3498414	chr6:55831055-55909122	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2584235	chr6:55831055-55910117	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3498413	chr6:55831100-55909183	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3498416	chr6:55831124-55909074	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1023687	chr6:55868611-55940255	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
12	nsv1020208	chr6:55870429-55932120	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
13	nsv538227	chr6:55870429-55932120	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
14	esv3529448	chr6:55902893-55910691	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3504061	chr6:55902893-55913891	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3529447	chr6:55903343-55910141	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3529449	chr6:55903343-55910141	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3504064	chr6:55903343-55913841	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3504065	chr6:55903343-55913841	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv14424	chr6:55904070-55909060	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv2559107	chr6:55906754-55908770	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55899200-55920400	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:55905800-55911600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:55906200-55908000	Weak transcription	HSMM	muscle
4	chr6:55906200-55908400	Weak transcription	NHDF-Ad	bronchial
5	chr6:55906200-55910800	Weak transcription	HSMMtube	muscle
6	chr6:55906400-55907800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:55906400-55907800	Weak transcription	Osteobl	bone
8	chr6:55907400-55907600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:55907400-55908200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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