Variant report

Variant	rs624149
Chromosome Location	chr9:71020830-71020831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10780765	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11141314	1.00[CEU][hapmap]
rs11141421	0.86[ASN][1000 genomes]
rs11141422	0.86[ASN][1000 genomes]
rs11141432	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11141457	0.86[ASN][1000 genomes]
rs11141466	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11141888	0.83[ASN][1000 genomes]
rs11141997	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs11142075	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs12353500	0.81[JPT][hapmap]
rs2480133	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs265106	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2987708	0.96[ASN][1000 genomes]
rs443057	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744594	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:70982400-71031200	Weak transcription	Fetal Lung	lung
2	chr9:70987800-71031800	Weak transcription	Fetal Stomach	stomach
3	chr9:70997800-71052600	Weak transcription	HSMMtube	muscle
4	chr9:70999000-71031800	Weak transcription	Colon Smooth Muscle	Colon
5	chr9:71004600-71027200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:71007000-71031000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:71007600-71022600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr9:71007600-71032000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr9:71019600-71032000	Weak transcription	Left Ventricle	heart
10	chr9:71020200-71032000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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