Variant report

Variant	rs62416373
Chromosome Location	chr6:54911572-54911573
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10456177	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10456691	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11966562	0.80[EUR][1000 genomes]
rs12194068	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12196771	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12202775	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12213653	0.81[EUR][1000 genomes]
rs4518493	0.81[EUR][1000 genomes]
rs62416417	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7738254	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364886	chr6:54880042-54912395	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
2	nsv1033756	chr6:54881828-54944304	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv538225	chr6:54881828-54944304	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54910000-54911600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:54910600-54913800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:54910600-54913800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:54911200-54913400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:54911200-54913600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:54911400-54911800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:54911400-54911800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:54911400-54911800	Flanking Active TSS	Fetal Heart	heart
9	chr6:54911400-54911800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr6:54911400-54912000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:54911400-54912200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:54911400-54912200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:54911400-54912200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:54911400-54912400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:54911400-54912400	Enhancers	Duodenum Mucosa	Duodenum
16	chr6:54911400-54912400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr6:54911400-54913200	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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