Variant report

Variant	rs62416416
Chromosome Location	chr6:54973902-54973903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10456178	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11966562	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12191770	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192396	0.83[EUR][1000 genomes]
rs12194068	0.81[EUR][1000 genomes]
rs12199525	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12209948	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213653	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3125276	0.81[EUR][1000 genomes]
rs4236121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4236122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4289638	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4339456	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4398735	0.83[EUR][1000 genomes]
rs4438959	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4518493	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4712089	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715497	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4715498	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4715516	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56217917	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56776090	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416360	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62416378	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62416417	0.82[EUR][1000 genomes]
rs62416556	0.83[EUR][1000 genomes]
rs72975482	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72978512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755108	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9357829	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9357831	0.81[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54972600-54974000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:54972800-54974800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:54973000-54974000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr6:54973000-54974000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:54973000-54974000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:54973000-54974000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:54973000-54974200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:54973200-54974000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:54973200-54974000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr6:54973200-54974000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:54973400-54974000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:54973600-54974000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:54973600-54974000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:54973600-54974000	Enhancers	Placenta Amnion	Placenta Amnion
15	chr6:54973600-54974200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:54973600-54974200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:54973800-54974800	Enhancers	HUES6 Cell Line	embryonic stem cell

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