Variant report

Variant	rs62417377
Chromosome Location	chr6:56804391-56804392
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56795022..56797639-chr6:56802844..56804905,2	K562	blood:
2	chr6:56799400..56801740-chr6:56804250..56805836,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10498814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12175661	0.96[EUR][1000 genomes]
rs13205191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888268	0.96[EUR][1000 genomes]
rs17758527	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17758663	0.96[EUR][1000 genomes]
rs1839837	0.96[EUR][1000 genomes]
rs1903331	0.92[ASN][1000 genomes]
rs2306011	0.96[EUR][1000 genomes]
rs28498151	0.96[EUR][1000 genomes]
rs35942895	0.93[ASN][1000 genomes]
rs4576249	0.96[EUR][1000 genomes]
rs57994994	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58099889	0.96[EUR][1000 genomes]
rs58332182	0.87[EUR][1000 genomes]
rs59106338	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60401134	0.96[EUR][1000 genomes]
rs60910121	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62411412	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62411417	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62411418	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62411419	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62411420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62411421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62411422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62411423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62411425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62411430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417378	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62417385	0.94[EUR][1000 genomes]
rs9349842	0.96[EUR][1000 genomes]
rs9357936	0.96[EUR][1000 genomes]
rs9367700	0.96[EUR][1000 genomes]
rs9367701	0.96[EUR][1000 genomes]
rs9367702	0.96[EUR][1000 genomes]
rs9370550	0.96[EUR][1000 genomes]
rs9370553	0.96[EUR][1000 genomes]
rs9370554	0.96[EUR][1000 genomes]
rs9382673	0.96[EUR][1000 genomes]
rs9396238	0.96[EUR][1000 genomes]
rs9396240	0.96[EUR][1000 genomes]
rs9396245	0.96[EUR][1000 genomes]
rs9396251	0.92[EUR][1000 genomes]
rs9396254	0.96[EUR][1000 genomes]
rs9464411	0.96[EUR][1000 genomes]
rs9464412	0.96[EUR][1000 genomes]
rs9464413	0.96[EUR][1000 genomes]
rs9475757	0.96[EUR][1000 genomes]
rs9475761	0.96[EUR][1000 genomes]
rs9475762	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1021651	chr6:56569444-56966319	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv538228	chr6:56569444-56966319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1022714	chr6:56729767-56826642	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv538229	chr6:56729767-56826642	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56801000-56804400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:56802400-56804400	Enhancers	NHDF-Ad	bronchial
3	chr6:56802400-56804400	Enhancers	NHLF	lung
4	chr6:56802600-56804400	Enhancers	HMEC	breast
5	chr6:56802600-56804400	Enhancers	NH-A	brain
6	chr6:56802600-56804400	Enhancers	Osteobl	bone
7	chr6:56803000-56804400	Enhancers	NHEK	skin
8	chr6:56803200-56804400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:56803400-56804400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:56803600-56804400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:56803800-56806400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:56804000-56804400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:56804000-56804400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:56804000-56804400	Enhancers	Hela-S3	cervix
15	chr6:56804200-56804400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:56804200-56804400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:56804200-56804400	Enhancers	A549	lung
18	chr6:56804200-56805600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:56804200-56813000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:56804200-56818000	Weak transcription	HSMM	muscle

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