Variant report
| Variant | rs62418311 |
|---|---|
| Chromosome Location | chr6:55048659-55048660 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10498801 | 0.90[ASN][1000 genomes] |
| rs10948893 | 0.92[ASN][1000 genomes] |
| rs10948894 | 0.90[ASN][1000 genomes] |
| rs12526414 | 0.91[ASN][1000 genomes] |
| rs2998995 | 0.95[ASN][1000 genomes] |
| rs3006854 | 0.92[ASN][1000 genomes] |
| rs3122148 | 0.91[ASN][1000 genomes] |
| rs3122149 | 0.80[ASN][1000 genomes] |
| rs3122151 | 0.92[ASN][1000 genomes] |
| rs3122152 | 0.91[ASN][1000 genomes] |
| rs3134689 | 0.92[ASN][1000 genomes] |
| rs3134690 | 0.91[ASN][1000 genomes] |
| rs3134691 | 0.91[ASN][1000 genomes] |
| rs3134692 | 0.92[ASN][1000 genomes] |
| rs3134694 | 0.85[ASN][1000 genomes] |
| rs3134696 | 0.92[ASN][1000 genomes] |
| rs3134699 | 0.90[ASN][1000 genomes] |
| rs3134700 | 0.90[ASN][1000 genomes] |
| rs3134701 | 0.90[ASN][1000 genomes] |
| rs3134703 | 0.80[ASN][1000 genomes] |
| rs4236127 | 0.92[ASN][1000 genomes] |
| rs55873439 | 0.94[ASN][1000 genomes] |
| rs58828550 | 0.91[ASN][1000 genomes] |
| rs59420753 | 0.92[ASN][1000 genomes] |
| rs59867521 | 0.91[ASN][1000 genomes] |
| rs60304167 | 0.90[ASN][1000 genomes] |
| rs60550710 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs62418310 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6927478 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6937705 | 0.88[ASN][1000 genomes] |
| rs6937878 | 0.90[ASN][1000 genomes] |
| rs6939376 | 0.90[ASN][1000 genomes] |
| rs73434718 | 0.92[ASN][1000 genomes] |
| rs7758861 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7775741 | 0.96[ASN][1000 genomes] |
| rs7775745 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016461 | chr6:55038131-55129663 | Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:55048200-55051000 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
