Variant report

Variant	rs62422675
Chromosome Location	chr1:169474543-169474544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169452842..169460813-chr1:169474364..169480814,10	K562	blood:
2	chr1:169454229..169456057-chr1:169472961..169475899,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117479	Chromatin interaction
ENSG00000213062	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs1039033	0.82[ASN][1000 genomes]
rs10457808	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10457809	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10457844	0.80[ASN][1000 genomes]
rs10782302	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs108422	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10872634	0.82[ASN][1000 genomes]
rs11155496	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11155498	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155596	0.82[ASN][1000 genomes]
rs11155606	0.81[ASN][1000 genomes]
rs11155610	0.81[ASN][1000 genomes]
rs11155623	0.82[ASN][1000 genomes]
rs11155636	0.82[ASN][1000 genomes]
rs11155637	0.80[ASN][1000 genomes]
rs11155638	0.82[ASN][1000 genomes]
rs11155653	0.81[ASN][1000 genomes]
rs11155659	0.83[ASN][1000 genomes]
rs11155666	0.82[ASN][1000 genomes]
rs11752659	0.82[ASN][1000 genomes]
rs12189562	0.81[ASN][1000 genomes]
rs12190574	0.81[ASN][1000 genomes]
rs12190903	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12191199	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12192249	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12193960	0.82[ASN][1000 genomes]
rs12195369	0.82[ASN][1000 genomes]
rs12199888	0.82[ASN][1000 genomes]
rs12200565	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12201852	0.82[ASN][1000 genomes]
rs12206182	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12206564	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12206945	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12207086	0.82[ASN][1000 genomes]
rs12212736	0.82[ASN][1000 genomes]
rs12214151	0.81[ASN][1000 genomes]
rs12216199	0.82[ASN][1000 genomes]
rs12216304	0.81[ASN][1000 genomes]
rs12374612	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12660725	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13196803	0.82[ASN][1000 genomes]
rs151572	0.83[ASN][1000 genomes]
rs151573	0.86[ASN][1000 genomes]
rs151637	0.84[ASN][1000 genomes]
rs151638	0.86[ASN][1000 genomes]
rs17303769	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1875400	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1875401	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2001102	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2036052	0.82[ASN][1000 genomes]
rs2062634	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2062635	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2132169	0.82[ASN][1000 genomes]
rs239189	0.81[ASN][1000 genomes]
rs239190	0.82[ASN][1000 genomes]
rs239193	0.81[ASN][1000 genomes]
rs239194	0.82[ASN][1000 genomes]
rs239195	0.82[ASN][1000 genomes]
rs239197	0.82[ASN][1000 genomes]
rs239199	0.82[ASN][1000 genomes]
rs239201	0.82[ASN][1000 genomes]
rs239203	0.82[ASN][1000 genomes]
rs239204	0.82[ASN][1000 genomes]
rs239206	0.82[ASN][1000 genomes]
rs239207	0.82[ASN][1000 genomes]
rs239211	0.82[ASN][1000 genomes]
rs239212	0.82[ASN][1000 genomes]
rs239216	0.82[ASN][1000 genomes]
rs239217	0.82[ASN][1000 genomes]
rs239219	0.82[ASN][1000 genomes]
rs239221	0.83[ASN][1000 genomes]
rs239222	0.84[ASN][1000 genomes]
rs239223	0.82[ASN][1000 genomes]
rs239226	0.84[ASN][1000 genomes]
rs239227	0.84[ASN][1000 genomes]
rs239229	0.84[ASN][1000 genomes]
rs239230	0.84[ASN][1000 genomes]
rs239231	0.84[ASN][1000 genomes]
rs239232	0.84[ASN][1000 genomes]
rs239235	0.84[ASN][1000 genomes]
rs239237	0.84[ASN][1000 genomes]
rs239238	0.84[ASN][1000 genomes]
rs239239	0.86[ASN][1000 genomes]
rs239242	0.86[ASN][1000 genomes]
rs239245	0.86[ASN][1000 genomes]
rs239246	0.86[ASN][1000 genomes]
rs239247	0.86[ASN][1000 genomes]
rs239248	0.86[ASN][1000 genomes]
rs239249	0.86[ASN][1000 genomes]
rs2398132	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs240110	0.89[ASN][1000 genomes]
rs240112	0.89[ASN][1000 genomes]
rs240115	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs240141	0.86[ASN][1000 genomes]
rs240143	0.86[ASN][1000 genomes]
rs240145	0.86[ASN][1000 genomes]
rs240146	0.86[ASN][1000 genomes]
rs240147	0.86[ASN][1000 genomes]
rs240148	0.86[ASN][1000 genomes]
rs240150	0.86[ASN][1000 genomes]
rs240153	0.87[ASN][1000 genomes]
rs240154	0.87[ASN][1000 genomes]
rs240156	0.89[ASN][1000 genomes]
rs240164	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs240764	0.85[EUR][1000 genomes]
rs35168784	0.82[ASN][1000 genomes]
rs369125	0.82[ASN][1000 genomes]
rs370757	0.82[ASN][1000 genomes]
rs395521	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4461738	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs454747	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4571568	0.83[ASN][1000 genomes]
rs58266877	0.81[ASN][1000 genomes]
rs6905221	0.82[ASN][1000 genomes]
rs6907240	0.82[ASN][1000 genomes]
rs6909880	0.82[ASN][1000 genomes]
rs6925840	0.82[ASN][1000 genomes]
rs6938440	0.82[ASN][1000 genomes]
rs7740826	0.82[ASN][1000 genomes]
rs7747014	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv831871	chr1:169320673-169486680	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169472400-169477200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:169473800-169476800	Weak transcription	HepG2	liver
3	chr1:169473800-169477600	Weak transcription	Stomach Mucosa	stomach

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