Variant report

Variant	rs62428597
Chromosome Location	chr6:133490248-133490249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10457600	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10872402	0.83[ASN][1000 genomes]
rs11154715	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154207	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190728	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192002	0.83[EUR][1000 genomes]
rs12192605	0.83[EUR][1000 genomes]
rs12193038	0.85[ASN][1000 genomes]
rs12193158	0.85[ASN][1000 genomes]
rs12196069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199138	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12199555	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199738	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12199958	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202540	0.85[ASN][1000 genomes]
rs12206291	0.90[EUR][1000 genomes]
rs12206438	0.85[ASN][1000 genomes]
rs12210216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213350	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12213452	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12213690	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215217	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1336520	1.00[AFR][1000 genomes]
rs1856291	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28405267	1.00[AFR][1000 genomes]
rs5025271	1.00[AFR][1000 genomes]
rs57161827	0.83[EUR][1000 genomes]
rs59793266	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62428563	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62428596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62428664	1.00[AFR][1000 genomes]
rs62428665	1.00[AFR][1000 genomes]
rs62428666	1.00[AFR][1000 genomes]
rs62428668	1.00[AFR][1000 genomes]
rs62428724	1.00[AFR][1000 genomes]
rs62428725	1.00[AFR][1000 genomes]
rs62428726	1.00[AFR][1000 genomes]
rs62430313	1.00[AFR][1000 genomes]
rs62430315	1.00[AFR][1000 genomes]
rs62430317	1.00[AFR][1000 genomes]
rs62430318	1.00[AFR][1000 genomes]
rs62430319	1.00[AFR][1000 genomes]
rs62431677	1.00[AFR][1000 genomes]
rs62431680	1.00[AFR][1000 genomes]
rs62431681	1.00[AFR][1000 genomes]
rs6902225	0.85[EUR][1000 genomes]
rs6913444	0.91[EUR][1000 genomes]
rs72557636	0.80[EUR][1000 genomes]
rs7738592	0.82[EUR][1000 genomes]
rs7746390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748926	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749533	0.82[EUR][1000 genomes]
rs7750218	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7750279	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7750376	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7752905	0.83[ASN][1000 genomes]
rs7754486	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7756963	0.92[EUR][1000 genomes]
rs7761372	0.83[EUR][1000 genomes]
rs7763647	0.82[ASN][1000 genomes]
rs7766470	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7767378	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7767651	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770031	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7773069	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9373038	0.85[ASN][1000 genomes]
rs9373043	1.00[AFR][1000 genomes]
rs9375940	0.83[ASN][1000 genomes]
rs9375942	0.83[ASN][1000 genomes]
rs9375955	1.00[AFR][1000 genomes]
rs9389052	0.84[ASN][1000 genomes]
rs9389066	1.00[AFR][1000 genomes]
rs9399052	0.83[ASN][1000 genomes]
rs9399055	1.00[AFR][1000 genomes]
rs9399057	1.00[AFR][1000 genomes]
rs9402484	0.83[ASN][1000 genomes]
rs9402485	0.82[ASN][1000 genomes]
rs9402486	0.83[ASN][1000 genomes]
rs9402487	0.85[ASN][1000 genomes]
rs9483554	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9483557	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9483560	0.85[ASN][1000 genomes]
rs9493540	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9493544	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9493554	0.83[ASN][1000 genomes]
rs957183	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv886677	chr6:133454738-133515602	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133486800-133493200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:133489200-133491200	Enhancers	Brain Germinal Matrix	brain
3	chr6:133490000-133492000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:133490200-133492000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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