Variant report

Variant	rs62428663
Chromosome Location	chr6:133654129-133654130
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10484669	1.00[AFR][1000 genomes]
rs1336520	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886983	1.00[AFR][1000 genomes]
rs2095602	1.00[AFR][1000 genomes]
rs34751763	0.82[ASN][1000 genomes]
rs62428664	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62428665	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62428666	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62428668	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62428724	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62428725	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62428726	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62430315	0.80[ASN][1000 genomes]
rs62430317	0.86[ASN][1000 genomes]
rs62430318	0.86[ASN][1000 genomes]
rs62430319	0.86[ASN][1000 genomes]
rs62431672	0.81[ASN][1000 genomes]
rs62431677	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62431680	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62431681	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742300	1.00[AFR][1000 genomes]
rs745091	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133613000-133655000	Weak transcription	Hela-S3	cervix
2	chr6:133643200-133658200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:133648000-133654400	Weak transcription	Psoas Muscle	Psoas
4	chr6:133648600-133654200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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