Variant report

Variant	rs62428666
Chromosome Location	chr6:133658869-133658870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12173440	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12175835	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12191026	1.00[AFR][1000 genomes]
rs12196069	1.00[AFR][1000 genomes]
rs12196492	1.00[AFR][1000 genomes]
rs12199138	1.00[AFR][1000 genomes]
rs12200393	1.00[AFR][1000 genomes]
rs12210216	1.00[AFR][1000 genomes]
rs12211999	1.00[AFR][1000 genomes]
rs1336520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28405267	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34751763	0.81[ASN][1000 genomes]
rs5025271	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs62428596	1.00[AFR][1000 genomes]
rs62428597	1.00[AFR][1000 genomes]
rs62428663	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62428664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62428665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62428668	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62428724	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62428725	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62428726	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62430313	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs62430315	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62430317	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62430318	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62430319	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62431672	0.82[EUR][1000 genomes]
rs62431677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62431680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62431681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6919155	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs745091	0.94[ASN][1000 genomes]
rs7746390	1.00[AFR][1000 genomes]
rs9373043	1.00[AFR][1000 genomes]
rs9373044	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9373045	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9373046	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9373047	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9375955	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9389064	0.82[AMR][1000 genomes]
rs9389066	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9399055	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9399057	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9402501	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9402502	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133654600-133660000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:133654600-133667800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:133655600-133660000	Weak transcription	Psoas Muscle	Psoas
4	chr6:133657400-133660800	Enhancers	Hela-S3	cervix
5	chr6:133658000-133659000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:133658200-133659000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:133658200-133659200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:133658200-133659200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:133658200-133659200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:133658400-133662800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:133658600-133660000	Weak transcription	A549	lung
12	chr6:133658800-133659000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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