Variant report

Variant	rs62434096
Chromosome Location	chr6:150945093-150945094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RELA	chr6:150943996-150945139	GM19193	blood:	n/a	n/a
2	POLR2A	chr6:150943705-150945126	Raji	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000224029	TF binding region

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11968779	1.00[EUR][1000 genomes]
rs1352975	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17080012	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs201531	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2345668	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2345669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs275348	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4323318	0.95[EUR][1000 genomes]
rs4400227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4530869	0.95[EUR][1000 genomes]
rs4869921	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4869922	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4870533	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4870534	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4870535	0.97[EUR][1000 genomes]
rs4870537	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62432653	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62432656	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62432657	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62432658	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62432659	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62434060	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62434061	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62434062	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62434064	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62434092	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434093	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434094	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434103	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434104	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73002187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73002188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73002195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73004311	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73016045	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73016054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9478767	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9478768	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9478769	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9478770	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9478771	0.97[EUR][1000 genomes]
rs9478772	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9478773	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9478774	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9480490	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9480492	0.97[EUR][1000 genomes]
rs9480493	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9480494	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9480495	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9480496	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9480497	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9480499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480505	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv886774	chr6:150931131-150983318	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150928400-150952800	Weak transcription	Right Ventricle	heart
2	chr6:150928600-150948800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:150931000-150947400	Weak transcription	Placenta	Placenta
4	chr6:150939000-150945200	Enhancers	Adipose Nuclei	Adipose
5	chr6:150939000-150949600	Weak transcription	Pancreas	Pancrea
6	chr6:150939000-150954200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:150939800-150948600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:150940800-150947400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:150940800-150948600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:150941200-150953000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:150941800-150947000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:150941800-150954000	Weak transcription	Brain Angular Gyrus	brain
13	chr6:150941800-150962600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:150942000-150947400	Weak transcription	Fetal Lung	lung
15	chr6:150942000-150949600	Weak transcription	Colonic Mucosa	Colon
16	chr6:150942000-150949600	Weak transcription	Gastric	stomach
17	chr6:150942200-150948800	Weak transcription	Stomach Mucosa	stomach
18	chr6:150942400-150948000	Weak transcription	Small Intestine	intestine
19	chr6:150942600-150947400	Weak transcription	Fetal Intestine Large	intestine
20	chr6:150942600-150948000	Weak transcription	Fetal Intestine Small	intestine
21	chr6:150942800-150945600	Enhancers	Primary hematopoietic stem cells	blood
22	chr6:150943000-150945600	Enhancers	Left Ventricle	heart
23	chr6:150943000-150945600	Enhancers	Right Atrium	heart
24	chr6:150943200-150947400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:150943400-150945600	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr6:150943400-150945600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:150943800-150947400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:150944200-150945400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:150944200-150945600	Enhancers	Spleen	Spleen
30	chr6:150944600-150945400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:150944600-150945400	Strong transcription	Fetal Stomach	stomach
32	chr6:150944600-150945600	Flanking Active TSS	Thymus	Thymus
33	chr6:150944600-150947400	Weak transcription	Fetal Kidney	kidney
34	chr6:150944600-150948000	Weak transcription	Liver	Liver
35	chr6:150944800-150945200	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr6:150944800-150945400	Enhancers	Duodenum Mucosa	Duodenum
37	chr6:150944800-150945600	Genic enhancers	Lung	lung
38	chr6:150944800-150945800	Enhancers	Primary T cells from cord blood	blood
39	chr6:150944800-150946400	Enhancers	Primary B cells from peripheral blood	blood
40	chr6:150944800-150948200	Genic enhancers	Fetal Thymus	thymus
41	chr6:150945000-150945400	Strong transcription	Fetal Muscle Trunk	muscle
42	chr6:150945000-150945400	Enhancers	GM12878-XiMat	blood
43	chr6:150945000-150945800	Genic enhancers	Primary B cells from cord blood	blood
44	chr6:150945000-150947600	Weak transcription	Fetal Muscle Leg	muscle
45	chr6:150945000-150948000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:150945000-150948000	Weak transcription	HUVEC	blood vessel
47	chr6:150945000-150950000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:150945000-150954200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links