Variant report

Variant	rs62441215
Chromosome Location	chr6:150640133-150640134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1538483	0.87[EUR][1000 genomes]
rs1890522	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4478415	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58500904	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62441216	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9384388	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv524641	chr6:150625572-150644030	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150619600-150641200	Weak transcription	Right Atrium	heart
2	chr6:150635800-150641200	Weak transcription	Fetal Lung	lung
3	chr6:150636400-150640600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:150636400-150640800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:150636600-150641000	Weak transcription	Right Ventricle	heart
6	chr6:150638000-150642200	Enhancers	Fetal Muscle Leg	muscle
7	chr6:150638200-150641200	Weak transcription	Fetal Heart	heart
8	chr6:150638400-150641200	Weak transcription	Left Ventricle	heart
9	chr6:150639000-150641000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr6:150639600-150643200	Weak transcription	Lung	lung
11	chr6:150639800-150641000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:150639800-150641000	Weak transcription	Psoas Muscle	Psoas
13	chr6:150640000-150641200	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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