Variant report

Variant	rs62447353
Chromosome Location	chr7:48651233-48651234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12718290	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12718292	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13223000	0.92[EUR][1000 genomes]
rs13234438	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13234500	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34021932	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34598210	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35302464	0.92[EUR][1000 genomes]
rs35316325	0.83[EUR][1000 genomes]
rs35483521	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62447337	0.88[EUR][1000 genomes]
rs62447338	0.86[EUR][1000 genomes]
rs62447359	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62448770	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv888008	chr7:48568425-48652224	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48635800-48672200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:48648800-48651400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr7:48649400-48652200	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:48650200-48672200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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