Variant report

Variant	rs62463731
Chromosome Location	chr7:101521978-101521979
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101513234..101515852-chr7:101521619..101524007,2	MCF-7	breast:
2	chr7:101520471..101523055-chr7:101583923..101585859,2	MCF-7	breast:
3	chr7:101512083..101520283-chr7:101521327..101527237,12	K562	blood:
4	chr7:101520256..101523208-chr7:101584812..101586417,2	MCF-7	breast:
5	chr7:101511316..101513776-chr7:101520159..101522862,2	K562	blood:
6	chr7:101503950..101505782-chr7:101521350..101522997,2	MCF-7	breast:
7	chr7:101457279..101460777-chr7:101520866..101522863,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10953352	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953353	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11760677	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11761496	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765661	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11768652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154519	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154522	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62463725	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62463732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62463734	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62463736	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62463737	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6465837	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101501000-101523600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr7:101501000-101525000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:101509000-101522600	Weak transcription	Primary T cells from cord blood	blood
4	chr7:101511600-101523400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr7:101511800-101523600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr7:101512200-101524000	Weak transcription	NHLF	lung
7	chr7:101513200-101523600	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr7:101513400-101523400	Weak transcription	Small Intestine	intestine
9	chr7:101513600-101522600	Weak transcription	Liver	Liver
10	chr7:101513600-101525200	Weak transcription	Spleen	Spleen
11	chr7:101514200-101522200	Weak transcription	HepG2	liver
12	chr7:101514200-101523800	Weak transcription	Fetal Kidney	kidney
13	chr7:101514400-101527400	Weak transcription	GM12878-XiMat	blood
14	chr7:101514600-101524000	Weak transcription	Fetal Stomach	stomach
15	chr7:101514800-101523400	Weak transcription	Hela-S3	cervix
16	chr7:101514800-101523600	Weak transcription	NHEK	skin
17	chr7:101514800-101525200	Weak transcription	Esophagus	oesophagus
18	chr7:101514800-101525400	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr7:101517400-101522400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr7:101517600-101524000	Weak transcription	Osteobl	bone
21	chr7:101518000-101523400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr7:101518000-101524000	Weak transcription	NHDF-Ad	bronchial
23	chr7:101518200-101523200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:101518200-101524000	Weak transcription	Primary B cells from cord blood	blood
25	chr7:101518400-101522200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:101518400-101523600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:101518400-101523600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:101518400-101526000	Weak transcription	Dnd41	blood
29	chr7:101518800-101523600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr7:101518800-101523800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr7:101518800-101524000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr7:101519000-101522400	Weak transcription	Fetal Muscle Leg	muscle
33	chr7:101519000-101522400	Weak transcription	Psoas Muscle	Psoas
34	chr7:101519000-101522400	Weak transcription	Thymus	Thymus
35	chr7:101519000-101522800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr7:101519000-101522800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:101519000-101522800	Weak transcription	Fetal Muscle Trunk	muscle
38	chr7:101519000-101522800	Weak transcription	Right Atrium	heart
39	chr7:101519000-101523000	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr7:101519000-101523400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr7:101519000-101523600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr7:101519000-101523600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr7:101519000-101524200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr7:101519000-101525800	Weak transcription	Brain Anterior Caudate	brain
45	chr7:101519000-101525800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr7:101519000-101525800	Weak transcription	Ovary	ovary
47	chr7:101519200-101522600	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr7:101519200-101522800	Weak transcription	Colon Smooth Muscle	Colon
49	chr7:101519200-101523600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr7:101519400-101525600	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links