Variant report

Variant	rs62468871
Chromosome Location	chr7:126683506-126683507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:126678600-126685844..7:127233104-127239235	H1-hESC	embryonic stem cell:	embryo
2	7:126085913-126088095..7:126678600-126685844	K562	blood:
3	7:126678600-126685844..7:127009457-127018926	H1-hESC	embryonic stem cell:	embryo
4	7:126678600-126685844..7:126890676-126899918	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction
ENSG00000179562	Chromatin interaction
ENSG00000106328	Chromatin interaction
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10268335	0.97[EUR][1000 genomes]
rs10487464	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10487465	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10487466	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11563750	0.97[EUR][1000 genomes]
rs11563755	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11563756	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11563757	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11563758	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11563759	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11563760	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11563761	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11563782	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12669516	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17644601	0.89[AMR][1000 genomes]
rs17862270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17862277	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17863187	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17864094	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17864106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17874838	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2237781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2299526	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62468872	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6958658	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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