Variant report

Variant	rs62468892
Chromosome Location	chr7:126866151-126866152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10487472	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12334074	0.86[EUR][1000 genomes]
rs17862333	0.86[EUR][1000 genomes]
rs17862345	0.82[EUR][1000 genomes]
rs17863257	0.82[EUR][1000 genomes]
rs17864165	0.90[EUR][1000 genomes]
rs17864170	0.86[EUR][1000 genomes]
rs17865066	0.86[EUR][1000 genomes]
rs17865434	0.86[EUR][1000 genomes]
rs17866153	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17866414	0.90[EUR][1000 genomes]
rs17866742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17866745	0.82[EUR][1000 genomes]
rs17866749	0.82[EUR][1000 genomes]
rs17867232	0.82[EUR][1000 genomes]
rs17867821	0.82[EUR][1000 genomes]
rs17869543	0.82[EUR][1000 genomes]
rs62468898	0.86[EUR][1000 genomes]
rs62468908	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1819919	chr7:126850298-126888714	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126864400-126866600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:126864400-126866800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:126866000-126867200	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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