Variant report
| Variant | rs62474615 |
|---|---|
| Chromosome Location | chr7:112156110-112156111 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:18)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:18 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr7:112156100-112156250 | NHDF-neo | bronchial: | n/a | n/a |
| 2 | CTCF | chr7:112156095-112156294 | A549 | lung: | n/a | n/a |
| 3 | RAD21 | chr7:112156032-112156364 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 4 | RAD21 | chr7:112156095-112156329 | SK-N-SH_RA | brain: | n/a | n/a |
| 5 | CTCF | chr7:112156081-112156363 | HCT-116 | colon: | n/a | n/a |
| 6 | RAD21 | chr7:112155998-112156370 | HCT-116 | colon: | n/a | n/a |
| 7 | RAD21 | chr7:112156058-112156339 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 8 | CEBPB | chr7:112155971-112156187 | HepG2 | liver: | n/a | n/a |
| 9 | CTCF | chr7:112156080-112156230 | RPTEC | kidney: | n/a | n/a |
| 10 | CTCF | chr7:112156060-112156210 | WI-38 | lung: | n/a | n/a |
| 11 | RAD21 | chr7:112156005-112156488 | HCT-116 | colon: | n/a | n/a |
| 12 | CEBPB | chr7:112155871-112156154 | A549 | lung: | n/a | n/a |
| 13 | RAD21 | chr7:112156066-112156401 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 14 | CTCF | chr7:112156080-112156230 | A549 | lung: | n/a | n/a |
| 15 | CTCF | chr7:112156020-112156170 | A549 | lung: | n/a | n/a |
| 16 | CTCF | chr7:112156003-112156360 | MCF-7 | breast: | n/a | n/a |
| 17 | CTCF | chr7:112156099-112156425 | K562 | blood: | n/a | n/a |
| 18 | CTCF | chr7:112156080-112156230 | WERI-Rb-1 | eye: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:112118477..112121332-chr7:112154605..112156995,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| NPM1P14 | TF binding region |
| ENSG00000181016 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:3)
| rs_ID | r2[population] |
|---|---|
| rs3128429 | 0.84[ASN][1000 genomes] |
| rs765507 | 0.84[AMR][1000 genomes] |
| rs886852 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531436 | chr7:111856171-112585407 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 105 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
