Variant report

Variant	rs62474778
Chromosome Location	chr7:147608525-147608526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12533758	0.86[ASN][1000 genomes]
rs13225365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13233606	0.80[EUR][1000 genomes]
rs13243566	0.80[EUR][1000 genomes]
rs13247212	0.83[EUR][1000 genomes]
rs2538973	0.84[ASN][1000 genomes]
rs34103397	0.83[EUR][1000 genomes]
rs62482322	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147601200-147609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:147606400-147608600	Enhancers	Fetal Muscle Leg	muscle
3	chr7:147606600-147608600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:147606600-147610200	Enhancers	Adipose Nuclei	Adipose
5	chr7:147607000-147609200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:147607000-147612400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:147607200-147608600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:147607200-147612200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:147607200-147612600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:147608000-147609000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:147608200-147608600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:147608200-147608800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr7:147608200-147608800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr7:147608200-147609200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr7:147608200-147609800	Enhancers	Primary hematopoietic stem cells	blood
16	chr7:147608200-147609800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:147608200-147609800	Enhancers	Fetal Lung	lung
18	chr7:147608200-147610000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr7:147608200-147610000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr7:147608200-147610000	Enhancers	Brain Substantia Nigra	brain
21	chr7:147608400-147608600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr7:147608400-147609600	Enhancers	Psoas Muscle	Psoas

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