Variant report

Variant	rs62487001
Chromosome Location	chr7:105211464-105211465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:105211266-105211464	MCF-7	breast:	n/a	n/a
2	CEBPB	chr7:105211344-105211514	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105171919..105174630-chr7:105210042..105212382,2	K562	blood:

Variant related genes	Relation type
ENSG00000272604	TF binding region
ENSG00000135249	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12538052	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12540022	0.87[EUR][1000 genomes]
rs1728646	0.84[EUR][1000 genomes]
rs2463632	0.91[EUR][1000 genomes]
rs2463634	0.82[EUR][1000 genomes]
rs2692428	0.85[EUR][1000 genomes]
rs4585682	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55807006	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62486981	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62486982	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62486983	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62486984	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62486989	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62486990	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62486991	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62486992	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62486993	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62486996	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62486997	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62486998	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs698191	0.85[EUR][1000 genomes]
rs711435	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7790660	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7790913	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs818479	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs818625	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3372747	chr7:105211235-105211484	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105174000-105212200	Weak transcription	Fetal Heart	heart
2	chr7:105174200-105213800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:105174600-105213200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:105188000-105214200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:105193200-105221400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:105193200-105221600	Weak transcription	Aorta	Aorta
7	chr7:105196000-105221600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr7:105196200-105212200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:105199400-105221600	Weak transcription	Pancreas	Pancrea
10	chr7:105201000-105217600	Weak transcription	HSMMtube	muscle
11	chr7:105201000-105221600	Weak transcription	Colonic Mucosa	Colon
12	chr7:105202000-105221600	Weak transcription	Esophagus	oesophagus
13	chr7:105205200-105212600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:105205400-105221400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr7:105205600-105221600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr7:105206200-105221600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr7:105206200-105221600	Weak transcription	HUVEC	blood vessel
18	chr7:105206400-105212600	Weak transcription	Fetal Brain Male	brain
19	chr7:105206400-105218200	Weak transcription	Colon Smooth Muscle	Colon
20	chr7:105206400-105221400	Weak transcription	Brain Hippocampus Middle	brain
21	chr7:105206400-105221600	Weak transcription	Fetal Kidney	kidney
22	chr7:105206600-105218200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr7:105207000-105221400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:105207000-105221400	Weak transcription	Fetal Brain Female	brain
25	chr7:105207000-105221800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr7:105208200-105221600	Weak transcription	HepG2	liver
27	chr7:105208400-105212000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr7:105208400-105214400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr7:105208400-105221400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr7:105208400-105221600	Weak transcription	NHDF-Ad	bronchial
31	chr7:105208600-105211600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr7:105208600-105211600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr7:105208600-105212400	Weak transcription	Spleen	Spleen
34	chr7:105208600-105213000	Weak transcription	Placenta	Placenta
35	chr7:105208600-105213400	Weak transcription	HMEC	breast
36	chr7:105208600-105214000	Weak transcription	Stomach Smooth Muscle	stomach
37	chr7:105208600-105217600	Weak transcription	Fetal Lung	lung
38	chr7:105208600-105218800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr7:105208600-105219600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr7:105208600-105221200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr7:105208600-105221400	Weak transcription	Brain Germinal Matrix	brain
42	chr7:105208600-105221400	Weak transcription	NH-A	brain
43	chr7:105208600-105221600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr7:105208600-105221600	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr7:105208600-105221600	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr7:105208600-105221600	Weak transcription	Right Ventricle	heart
47	chr7:105208800-105215200	Weak transcription	Hela-S3	cervix
48	chr7:105208800-105216400	Weak transcription	Ovary	ovary
49	chr7:105208800-105220600	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr7:105209000-105211600	Weak transcription	Primary T cells from cord blood	blood

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