Variant report

Variant	rs62507216
Chromosome Location	chr8:49981732-49981733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12056899	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13277549	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1588532	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1628843	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2667280	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2667288	0.90[EUR][1000 genomes]
rs2667291	0.84[EUR][1000 genomes]
rs341803	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs341811	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs341814	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34606575	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6472144	0.89[EUR][1000 genomes]
rs710894	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49979000-49981800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:49979000-49984200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:49979200-49984400	Weak transcription	K562	blood
4	chr8:49979400-49984600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:49979600-49982000	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr8:49979600-49984400	Weak transcription	Adipose Nuclei	Adipose
7	chr8:49979600-49984400	Weak transcription	Psoas Muscle	Psoas
8	chr8:49980800-49984400	Weak transcription	Hela-S3	cervix
9	chr8:49981400-49983800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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