Variant report

Variant	rs62508485
Chromosome Location	chr8:62953084-62953085
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10504342	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10504343	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16928243	0.81[AFR][1000 genomes]
rs16928246	0.81[AFR][1000 genomes]
rs16928247	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs16928248	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs16928256	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16928258	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16928263	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16928265	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16928270	0.80[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs16928290	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16928293	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16928294	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16928311	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16928313	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16928321	0.83[ASN][1000 genomes]
rs16928323	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16928335	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16928339	0.83[ASN][1000 genomes]
rs2882580	0.83[AFR][1000 genomes]
rs34021880	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs55713718	0.81[AFR][1000 genomes]
rs55897381	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs56713214	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs56718356	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs56992608	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56994025	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs57195776	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs57344798	0.81[ASN][1000 genomes]
rs57558807	0.82[AFR][1000 genomes]
rs58082140	0.81[ASN][1000 genomes]
rs58288894	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs58407334	0.81[AFR][1000 genomes]
rs58744393	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs58847321	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs58945141	0.82[AFR][1000 genomes]
rs59171191	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs59442402	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs59830726	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs59883965	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs60055232	0.83[ASN][1000 genomes]
rs60375122	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60575261	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs60821971	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs60927504	0.83[ASN][1000 genomes]
rs61273498	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs61345014	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs61400215	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs61507167	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62507378	0.81[AFR][1000 genomes]
rs62507379	0.81[AFR][1000 genomes]
rs62507383	0.81[AFR][1000 genomes]
rs62507384	0.81[AFR][1000 genomes]
rs62507415	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs62507421	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs62507422	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs62507423	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs62507424	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs62507425	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs62507428	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62507431	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62507433	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62507435	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62507436	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62507437	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62507438	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62507439	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62507610	0.86[AMR][1000 genomes]
rs62507615	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62507616	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62507617	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62507618	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62508481	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62508482	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62508484	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62508486	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62508487	0.83[ASN][1000 genomes]
rs62508488	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62508494	0.83[ASN][1000 genomes]
rs62508495	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62508496	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62508501	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62508502	0.83[ASN][1000 genomes]
rs6983592	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6990858	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6991146	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6991767	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6994588	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6994900	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6995761	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7011407	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7012385	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7015102	0.81[AFR][1000 genomes]
rs7015631	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7015943	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7016381	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72664028	0.83[ASN][1000 genomes]
rs72664033	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72664035	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72664036	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73682666	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73682684	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73682686	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73682687	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73682688	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890951	chr8:62889169-62989464	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv890952	chr8:62898648-62989464	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv890953	chr8:62899559-62989464	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv890954	chr8:62919691-63023132	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv890955	chr8:62919691-63062581	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv520442	chr8:62928715-62962071	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62953000-62958000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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