Variant report

Variant	rs62514797
Chromosome Location	chr8:58349584-58349585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM110B-11	chr8:58348579-58351315	l_3603_chr8:58348578-58353048_testes

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10086018	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10086935	0.93[ASN][1000 genomes]
rs10101274	0.93[ASN][1000 genomes]
rs10112629	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11990437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12156322	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1316350	0.94[ASN][1000 genomes]
rs13251134	0.81[ASN][1000 genomes]
rs13256707	0.82[AMR][1000 genomes]
rs13271121	0.85[ASN][1000 genomes]
rs16922120	0.82[AMR][1000 genomes]
rs16922131	0.91[ASN][1000 genomes]
rs16922170	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17332173	0.90[ASN][1000 genomes]
rs17819759	0.97[ASN][1000 genomes]
rs34246249	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34515816	0.94[ASN][1000 genomes]
rs34781696	0.90[ASN][1000 genomes]
rs34896551	0.99[ASN][1000 genomes]
rs35060274	0.88[ASN][1000 genomes]
rs35195028	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35530875	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35714499	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35879589	0.81[ASN][1000 genomes]
rs36029122	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36037881	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4486191	0.82[AMR][1000 genomes]
rs56198564	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56280635	0.88[ASN][1000 genomes]
rs60664715	0.83[EUR][1000 genomes]
rs6471603	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6471604	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6471605	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6980937	0.96[ASN][1000 genomes]
rs6988870	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6991061	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6991253	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6995173	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7011998	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816166	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7827772	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7833343	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7844365	0.85[ASN][1000 genomes]
rs7845730	0.96[ASN][1000 genomes]
rs9643360	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9643499	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758161	chr8:57930392-58474449	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759618	chr8:57930392-58474449	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv890936	chr8:58266339-58564501	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv524390	chr8:58305969-58572471	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv518178	chr8:58328635-58542880	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1029189	chr8:58336604-58409288	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv398466	chr8:58343401-58349915	Weak transcription	lncRNA	n/a	inside rSNPs	diseases
9	nsv6208	chr8:58345211-58389888	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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