Variant report

Variant	rs62517590
Chromosome Location	chr8:42939193-42939194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:42910109..42913983-chr8:42935455..42940036,4	K562	blood:

Variant related genes	Relation type
ENSG00000168522	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs13248091	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13249741	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13252221	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13256221	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13260731	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13269584	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13271956	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13273189	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13273989	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13276426	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13276821	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13281651	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13282019	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16891667	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17622577	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17622732	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34044853	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34143633	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34152125	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34210297	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34242561	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34320052	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34550994	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34582788	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34668583	0.89[AMR][1000 genomes]
rs34742882	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34920666	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35057982	0.82[EUR][1000 genomes]
rs35168459	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35258203	0.94[AMR][1000 genomes]
rs35316170	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35390123	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35441746	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35444991	0.84[AMR][1000 genomes]
rs35491765	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35823486	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35959188	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35970125	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36026629	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36091568	0.89[AMR][1000 genomes]
rs4524778	0.84[EUR][1000 genomes]
rs62515900	0.84[AMR][1000 genomes]
rs62515905	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62515908	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62515909	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62515910	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62515912	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62515913	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62515916	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62515917	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62515919	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62515920	0.90[AMR][1000 genomes]
rs62515948	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62515952	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62517594	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62517595	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62517599	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62517604	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62517605	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62517606	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62517626	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71231886	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890846	chr8:42625663-43240123	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
2	nsv1024688	chr8:42709414-43333639	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv539563	chr8:42709414-43333639	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
4	nsv1033927	chr8:42748842-43575771	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv533812	chr8:42755447-43528350	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
6	nsv1032781	chr8:42772394-43461484	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
7	nsv1021281	chr8:42807619-43472678	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
8	nsv429912	chr8:42852444-43701143	ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
9	nsv869499	chr8:42858608-43541986	Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
10	nsv916847	chr8:42858611-43541984	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
11	nsv1027779	chr8:42863024-43729296	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
12	nsv1025336	chr8:42905623-43333638	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
13	nsv539564	chr8:42905623-43333638	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
14	nsv831302	chr8:42909483-43105520	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
15	nsv1029380	chr8:42924737-43729296	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
16	nsv539565	chr8:42924737-43729296	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
17	nsv1021734	chr8:42936943-43824036	Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
18	nsv470208	chr8:42937608-43791691	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
19	nsv1021100	chr8:42938287-43333639	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
20	nsv539566	chr8:42938287-43333639	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62517590	FNTA	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42912800-42943800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:42912800-42948000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:42913000-42941200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:42913600-42940600	Weak transcription	Small Intestine	intestine
5	chr8:42914400-42942000	Strong transcription	Primary B cells from peripheral blood	blood
6	chr8:42914400-42942800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:42914400-42947800	Weak transcription	Stomach Mucosa	stomach
8	chr8:42914800-42942800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:42915200-42942000	Strong transcription	Fetal Intestine Large	intestine
10	chr8:42915400-42947200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr8:42916200-42941600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr8:42916200-42942000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr8:42916400-42941600	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr8:42916400-42942200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:42916800-42942000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr8:42916800-42942800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr8:42917000-42942800	Strong transcription	Fetal Stomach	stomach
18	chr8:42917200-42941600	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr8:42917600-42941600	Strong transcription	Fetal Muscle Trunk	muscle
20	chr8:42917600-42941600	Strong transcription	Dnd41	blood
21	chr8:42917600-42941800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr8:42917600-42941800	Strong transcription	Adipose Nuclei	Adipose
23	chr8:42917600-42942000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr8:42917600-42942000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr8:42917600-42942800	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr8:42917800-42941400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr8:42917800-42941600	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr8:42917800-42941600	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr8:42917800-42941800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr8:42917800-42941800	Strong transcription	Duodenum Mucosa	Duodenum
31	chr8:42917800-42942000	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr8:42917800-42942400	Strong transcription	Placenta	Placenta
33	chr8:42917800-42943000	Strong transcription	Fetal Brain Female	brain
34	chr8:42918000-42941600	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr8:42919000-42942000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr8:42919000-42943000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr8:42921000-42942600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr8:42922400-42941600	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr8:42922600-42942800	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr8:42922800-42941600	Strong transcription	Primary B cells from cord blood	blood
41	chr8:42923600-42941600	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr8:42923600-42942800	Strong transcription	Fetal Muscle Leg	muscle
43	chr8:42923800-42941200	Strong transcription	Left Ventricle	heart
44	chr8:42924000-42941800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr8:42924400-42941800	Strong transcription	Fetal Thymus	thymus
46	chr8:42924400-42941800	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr8:42927200-42943000	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr8:42929400-42941600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr8:42931200-42941800	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr8:42931600-42941200	Strong transcription	Duodenum Smooth Muscle	Duodenum

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