Variant report

Variant	rs62522989
Chromosome Location	chr8:94967338-94967339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:94965588..94968919-chr8:94970973..94974619,3	MCF-7	breast:
2	chr8:94927101..94932217-chr8:94967169..94973451,6	MCF-7	breast:
3	chr8:94936423..94938355-chr8:94966596..94969452,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264448	Chromatin interaction
ENSG00000164951	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs16916320	0.85[ASN][1000 genomes]
rs16916327	0.85[ASN][1000 genomes]
rs3115916	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3115917	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3115918	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3115919	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3115920	0.87[ASN][1000 genomes]
rs3115921	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3115925	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3115926	1.00[EUR][1000 genomes]
rs3115927	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3115931	1.00[EUR][1000 genomes]
rs3115936	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3115937	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3115941	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3115946	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3133986	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3133988	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3133989	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3133990	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3133993	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3133997	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133998	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3133999	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3134000	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134001	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134002	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134003	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134004	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134005	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3134006	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134007	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134008	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134009	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134011	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134013	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3134016	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55691744	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55914182	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58454714	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58866863	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59023505	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59797932	1.00[EUR][1000 genomes]
rs61294318	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61467536	0.83[AFR][1000 genomes]
rs61495155	0.89[EUR][1000 genomes]
rs61708878	1.00[EUR][1000 genomes]
rs62522980	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62523005	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62523006	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62523009	0.94[EUR][1000 genomes]
rs62523010	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62523011	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62523014	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62523015	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62523016	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62523017	0.85[ASN][1000 genomes]
rs62523018	0.85[ASN][1000 genomes]
rs62523019	0.85[ASN][1000 genomes]
rs6983462	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6989092	0.89[EUR][1000 genomes]
rs6997830	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7006289	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7836063	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7840040	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754970	chr8:94675324-94991724	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv982128	chr8:94966644-94973304	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:94965400-94967400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr8:94965400-94967600	Weak transcription	HepG2	liver
3	chr8:94965400-94969800	Weak transcription	Fetal Lung	lung
4	chr8:94965600-94969000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:94965600-94971800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:94965800-94967400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:94965800-94967400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:94965800-94967800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:94965800-94968600	Weak transcription	Fetal Intestine Large	intestine
10	chr8:94965800-94968600	Weak transcription	Fetal Intestine Small	intestine
11	chr8:94965800-94970200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr8:94966000-94969200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:94966200-94968400	Enhancers	Placenta	Placenta
14	chr8:94966400-94967400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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