Variant report

Variant	rs62523009
Chromosome Location	chr8:94983024-94983025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs16916320	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16916327	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3115916	0.82[EUR][1000 genomes]
rs3115917	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3115918	0.82[EUR][1000 genomes]
rs3115919	0.82[EUR][1000 genomes]
rs3115921	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3115925	0.94[EUR][1000 genomes]
rs3115926	0.94[EUR][1000 genomes]
rs3115927	0.94[EUR][1000 genomes]
rs3115931	0.94[EUR][1000 genomes]
rs3115936	0.94[EUR][1000 genomes]
rs3115937	0.94[EUR][1000 genomes]
rs3115941	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3115946	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3133986	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3133988	0.94[EUR][1000 genomes]
rs3133989	0.94[EUR][1000 genomes]
rs3133990	0.94[EUR][1000 genomes]
rs3133993	0.94[EUR][1000 genomes]
rs3133997	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3133998	0.85[EUR][1000 genomes]
rs3133999	0.94[EUR][1000 genomes]
rs3134000	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3134001	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3134002	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3134003	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3134004	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3134005	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3134006	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3134007	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3134008	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3134009	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3134011	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3134013	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3134016	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55691744	0.94[EUR][1000 genomes]
rs55914182	0.94[EUR][1000 genomes]
rs58454714	0.94[EUR][1000 genomes]
rs58866863	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59023505	0.94[EUR][1000 genomes]
rs59797932	0.94[EUR][1000 genomes]
rs61294318	0.94[EUR][1000 genomes]
rs61495155	0.94[EUR][1000 genomes]
rs61708878	0.94[EUR][1000 genomes]
rs62522980	0.94[EUR][1000 genomes]
rs62522989	0.94[EUR][1000 genomes]
rs62523005	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62523006	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62523010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62523011	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62523014	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62523015	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62523016	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62523017	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62523018	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62523019	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6989092	0.94[EUR][1000 genomes]
rs6997830	0.82[EUR][1000 genomes]
rs7006289	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7836063	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7840040	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754970	chr8:94675324-94991724	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:94982000-94984400	Weak transcription	HepG2	liver
2	chr8:94982000-94985200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:94982200-94983800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr8:94982200-94984000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr8:94982200-94984000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr8:94982400-94983800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr8:94982400-94984000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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